PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025839.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 170aa    MW: 18923 Da    PI: 10.5192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025839.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12249454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +h ++Er+RR+++N+ +  Lr+l P+    + k+ + a+i   A+e+Ik+L
  Aco025839.1  2 SHIAVERNRRRQMNEHLKVLRSLTPSF---YIKRGDQASIIGGAIEFIKEL 49
                 89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-10154No hitNo description
SuperFamilySSF474591.31E-15174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.97149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-12261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPSFYI KRGDQASIIG GAIEFIKELH LVLHSLEAKK  60
KRKSLSPSPT PSPRSLLHFN PSPPITNNSS HDSENIVKQL GACCNSPVAD VEAKISGSNV  120
LLRTLSKRVP GHVVKIITLL EKLDFEILHL NISSMEDTVL YSFVIKVRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790972.12e-89PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K62e-70MUTE_ARATH; Transcription factor MUTE
TrEMBLK4AXQ04e-85K4AXQ0_SOLLC; Uncharacterized protein
STRINGSolyc01g080050.2.11e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.16e-63bHLH family protein